Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm27320-201ENSMUST00000184892 109 ntBASIC11.62□□□□□ -0.55
Lire1P11260 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Gm18827-201ENSMUST00000188341 790 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.62□□□□□ -0.55
Lire1P11260 Gm38000-201ENSMUST00000192390 1215 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC11.62□□□□□ -0.55
Lire1P11260 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.62□□□□□ -0.55
Lire1P11260 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Gm45865-201ENSMUST00000211815 945 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.62□□□□□ -0.55
Lire1P11260 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 AC159747.1-201ENSMUST00000219903 265 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Cts7-204ENSMUST00000225321 1257 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC11.62□□□□□ -0.55
Lire1P11260 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Lire1P11260 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Lire1P11260 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Lire1P11260 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.62□□□□□ -0.55
Lire1P11260 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Gm8617-201ENSMUST00000118796 2222 ntBASIC11.62□□□□□ -0.55
Lire1P11260 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Lire1P11260 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lire1P11260 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
Lire1P11260 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
Lire1P11260 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gm19165-201ENSMUST00000204453 1982 ntBASIC11.61□□□□□ -0.55
Lire1P11260 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gm45496-201ENSMUST00000209918 2917 ntBASIC11.61□□□□□ -0.55
Lire1P11260 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Mir686-201ENSMUST00000102174 109 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Lire1P11260 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.61□□□□□ -0.55
Lire1P11260 Gm11637-201ENSMUST00000120601 592 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.61□□□□□ -0.55
Lire1P11260 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.61□□□□□ -0.55
Lire1P11260 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC11.61□□□□□ -0.55
Lire1P11260 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC11.61□□□□□ -0.55
Lire1P11260 Gm37466-201ENSMUST00000195692 652 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gm10146-201ENSMUST00000072739 309 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Lire1P11260 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Lire1P11260 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC11.61□□□□□ -0.55
Lire1P11260 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gm36970-201ENSMUST00000193688 1859 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
Lire1P11260 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC11.61□□□□□ -0.55
Lire1P11260 Gm42141-201ENSMUST00000196534 2172 ntBASIC11.61□□□□□ -0.55
Lire1P11260 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Lire1P11260 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lire1P11260 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.6□□□□□ -0.55
Lire1P11260 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Aebp1-202ENSMUST00000109829 2541 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Lire1P11260 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lire1P11260 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms