Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chmp6P0C0A3 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Gm6015-201ENSMUST00000217493 1586 ntBASIC13.24□□□□□ -0.29
Chmp6P0C0A3 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Gm28882-201ENSMUST00000185504 314 ntBASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.24□□□□□ -0.29
Chmp6P0C0A3 Gm18227-201ENSMUST00000211082 1468 ntBASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm9083-201ENSMUST00000120423 819 ntBASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm14760-201ENSMUST00000121831 999 ntBASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm27046-201ENSMUST00000182160 463 ntBASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Chmp6P0C0A3 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Chmp6P0C0A3 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms