Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm13570-201ENSMUST00000140763 309 ntBASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm8176-201ENSMUST00000191297 1099 ntBASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm3961-201ENSMUST00000204425 994 ntBASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm5950-201ENSMUST00000213337 772 ntBASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm11661-201ENSMUST00000121761 1327 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm25043-201ENSMUST00000158604 212 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm27516-201ENSMUST00000184237 98 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm43084-201ENSMUST00000200696 947 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm44958-201ENSMUST00000203734 736 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm39404-201ENSMUST00000216350 313 ntBASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Prpf40aQ9R1C7 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm44260-201ENSMUST00000204946 2094 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm15198-201ENSMUST00000117283 177 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm11531-201ENSMUST00000117614 555 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm2991-201ENSMUST00000173338 480 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm6621-201ENSMUST00000193251 772 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 AU017674-201ENSMUST00000222864 720 ntTSL 3 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 74.8 ms