Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm36970-201ENSMUST00000193688 1859 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm12218-201ENSMUST00000117666 399 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm11422-201ENSMUST00000118925 1103 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm15744-201ENSMUST00000161734 213 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm18059-201ENSMUST00000208073 580 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 AC134869.4-202ENSMUST00000224350 837 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 AC124433.1-201ENSMUST00000224483 1063 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 CT009757.3-201ENSMUST00000223367 2320 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 AC118639.2-201ENSMUST00000226289 223 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 AC122350.1-201ENSMUST00000228135 533 ntBASIC14.19□□□□□ -0.14
Scn11aQ9R053 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Scn11aQ9R053 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Gm11244-201ENSMUST00000121243 237 ntBASIC14.18□□□□□ -0.14
Scn11aQ9R053 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC14.18□□□□□ -0.14
Scn11aQ9R053 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Gm44329-201ENSMUST00000197469 112 ntBASIC14.18□□□□□ -0.14
Scn11aQ9R053 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Gm44506-201ENSMUST00000206278 965 ntBASIC14.18□□□□□ -0.14
Scn11aQ9R053 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC14.18□□□□□ -0.14
Scn11aQ9R053 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Scn11aQ9R053 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Scn11aQ9R053 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms