Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Gm43447-201ENSMUST00000198471 1535 ntBASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cpsf3Q9QXK7 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Gm14028-201ENSMUST00000117434 479 ntBASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Gm27341-201ENSMUST00000183570 106 ntBASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 CT571245.2-201ENSMUST00000218421 305 ntBASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Gm21027-201ENSMUST00000219300 1236 ntBASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Cpsf3Q9QXK7 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 AC113441.2-201ENSMUST00000221538 1468 ntBASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm22133-201ENSMUST00000102082 109 ntBASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm27627-201ENSMUST00000183644 150 ntBASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm27390-201ENSMUST00000184516 176 ntBASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm4607-201ENSMUST00000206649 577 ntBASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms