Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Gm43102-201ENSMUST00000201004 2324 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Gm19963-201ENSMUST00000208413 1255 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Gm5904-201ENSMUST00000210286 865 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Gm18615-201ENSMUST00000222919 1031 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Smc1aQ9CU62 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC13.66□□□□□ -0.22
Smc1aQ9CU62 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Gm12012-201ENSMUST00000118857 1066 ntBASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Nsd1-205ENSMUST00000224693 852 ntBASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Smc1aQ9CU62 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
Smc1aQ9CU62 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm5869-201ENSMUST00000200248 1257 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm13097-201ENSMUST00000210722 397 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms