Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.58□□□□□ -0.39
Trim60Q8VI40 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trim60Q8VI40 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trim60Q8VI40 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Gm24934-201ENSMUST00000103764 111 ntBASIC12.58□□□□□ -0.4
Trim60Q8VI40 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC12.58□□□□□ -0.4
Trim60Q8VI40 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Gm37201-201ENSMUST00000191845 523 ntBASIC12.58□□□□□ -0.4
Trim60Q8VI40 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim60Q8VI40 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.57□□□□□ -0.4
Trim60Q8VI40 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.57□□□□□ -0.4
Trim60Q8VI40 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gm12058-201ENSMUST00000118614 437 ntBASIC12.57□□□□□ -0.4
Trim60Q8VI40 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gm43172-201ENSMUST00000202139 2137 ntBASIC12.57□□□□□ -0.4
Trim60Q8VI40 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.57□□□□□ -0.4
Trim60Q8VI40 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim60Q8VI40 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.56□□□□□ -0.4
Trim60Q8VI40 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Gm14999-201ENSMUST00000121039 624 ntBASIC12.56□□□□□ -0.4
Trim60Q8VI40 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.56□□□□□ -0.4
Trim60Q8VI40 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms