Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm7537-201ENSMUST00000221660 1414 ntBASIC17.09■□□□□ 0.33
Usp47Q8BY87 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Gm15595-201ENSMUST00000120840 961 ntBASIC17.09■□□□□ 0.33
Usp47Q8BY87 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Gm23085-201ENSMUST00000157849 293 ntBASIC17.09■□□□□ 0.33
Usp47Q8BY87 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 AC153929.1-201ENSMUST00000219009 303 ntBASIC17.09■□□□□ 0.33
Usp47Q8BY87 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Gm6781-201ENSMUST00000038304 1242 ntBASIC17.09■□□□□ 0.33
Usp47Q8BY87 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC17.08■□□□□ 0.33
Usp47Q8BY87 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Gm13461-201ENSMUST00000120980 662 ntBASIC17.08■□□□□ 0.32
Usp47Q8BY87 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp47Q8BY87 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Usp47Q8BY87 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Gm43378-201ENSMUST00000199336 582 ntBASIC17.07■□□□□ 0.32
Usp47Q8BY87 Gm44100-201ENSMUST00000204329 436 ntBASIC17.07■□□□□ 0.32
Usp47Q8BY87 Gm10288-201ENSMUST00000084614 537 ntBASIC17.07■□□□□ 0.32
Usp47Q8BY87 Gm10702-201ENSMUST00000098929 1268 ntBASIC17.07■□□□□ 0.32
Usp47Q8BY87 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp47Q8BY87 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms