Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf40Q3U319 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf40Q3U319 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Btrc-209ENSMUST00000224478 2194 ntBASIC12.82□□□□□ -0.36
Rnf40Q3U319 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm28701-201ENSMUST00000189778 1010 ntTSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm37866-201ENSMUST00000191950 696 ntBASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm42696-201ENSMUST00000199859 1142 ntBASIC12.82□□□□□ -0.36
Rnf40Q3U319 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.82□□□□□ -0.36
Rnf40Q3U319 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Pate4-201ENSMUST00000034610 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Rnf40Q3U319 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm13517-201ENSMUST00000120782 1495 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm8410-201ENSMUST00000117225 605 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm11510-201ENSMUST00000120278 347 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm27622-201ENSMUST00000183779 60 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm37809-201ENSMUST00000195050 931 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm42723-202ENSMUST00000200561 1254 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 AC134439.1-201ENSMUST00000220923 600 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Olfr921-201ENSMUST00000071681 1181 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Mir339-201ENSMUST00000083659 96 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm10175-201ENSMUST00000086013 645 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm38273-201ENSMUST00000194987 2382 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC12.81□□□□□ -0.36
Rnf40Q3U319 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.81□□□□□ -0.36
Rnf40Q3U319 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rnf40Q3U319 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Gm10548-201ENSMUST00000097631 2629 ntBASIC12.8□□□□□ -0.36
Rnf40Q3U319 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.8□□□□□ -0.36
Rnf40Q3U319 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rnf40Q3U319 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 76.6 ms