Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 AC158355.1-201ENSMUST00000215895 1705 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm11451-201ENSMUST00000118946 630 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm4879-201ENSMUST00000122190 1272 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm25545-201ENSMUST00000122673 323 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Mir6923-201ENSMUST00000184592 72 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm5621-201ENSMUST00000187303 640 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm3332-201ENSMUST00000189337 928 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm7902-201ENSMUST00000198842 947 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm45120-201ENSMUST00000208880 408 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm19640-201ENSMUST00000214849 464 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC10.42□□□□□ -0.74
Col8a1Q00780 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Ntrk2-204ENSMUST00000224259 3049 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm5847-201ENSMUST00000178959 1595 ntBASIC10.42□□□□□ -0.74
Col8a1Q00780 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm7049-201ENSMUST00000223520 1712 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm37324-201ENSMUST00000194500 4504 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm43321-201ENSMUST00000198897 2409 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm13809-201ENSMUST00000117921 597 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm14314-201ENSMUST00000118225 1015 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm12948-201ENSMUST00000119406 682 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm12516-201ENSMUST00000120819 385 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm28388-201ENSMUST00000186262 437 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm17831-201ENSMUST00000205579 900 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Mt1-202ENSMUST00000211807 1085 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm9139-201ENSMUST00000218817 700 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 AC129219.2-201ENSMUST00000224324 701 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 AC169036.1-201ENSMUST00000227994 296 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm9996-201ENSMUST00000070359 913 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Gm26448-201ENSMUST00000082446 203 ntBASIC10.41□□□□□ -0.74
Col8a1Q00780 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 97.4 ms