Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm14724-201ENSMUST00000118400 537 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm4993-201ENSMUST00000118719 1174 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm12266-201ENSMUST00000120311 962 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 AC154680.1-201ENSMUST00000224376 859 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Mir6979-201ENSMUST00000183927 56 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC11.91□□□□□ -0.5
Chd3B1AR17 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.91□□□□□ -0.5
Chd3B1AR17 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Chd3B1AR17 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Chd3B1AR17 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chd3B1AR17 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm23912-201ENSMUST00000104687 87 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm12165-201ENSMUST00000117047 342 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm19459-201ENSMUST00000176240 835 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm7467-201ENSMUST00000185173 652 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm10774-201ENSMUST00000188689 204 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm18893-201ENSMUST00000198416 943 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Spcs1-203ENSMUST00000226374 592 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm1821-202ENSMUST00000227415 750 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm43807-201ENSMUST00000200678 1781 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Ksr1-207ENSMUST00000226282 5260 ntBASIC11.9□□□□□ -0.5
Chd3B1AR17 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Chd3B1AR17 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chd3B1AR17 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.9□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms