Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Ddx28Q9CWT6 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm12390-201ENSMUST00000117897 397 ntBASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm23363-201ENSMUST00000175024 79 ntBASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm26927-201ENSMUST00000182385 965 ntBASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm29127-201ENSMUST00000188304 517 ntBASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ddx28Q9CWT6 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Btrc-209ENSMUST00000224478 2194 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm12363-201ENSMUST00000122250 668 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 AC153962.4-201ENSMUST00000217878 242 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm32025-201ENSMUST00000217960 307 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Gm19163-201ENSMUST00000223313 780 ntBASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms