Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Trim28Q62318 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC15.72■□□□□ 0.11
Trim28Q62318 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Trim28Q62318 Gm14150-201ENSMUST00000122404 1354 ntBASIC15.72■□□□□ 0.11
Trim28Q62318 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim28Q62318 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Trim28Q62318 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC15.71■□□□□ 0.11
Trim28Q62318 Gm15573-201ENSMUST00000119487 540 ntBASIC15.71■□□□□ 0.11
Trim28Q62318 Gm11956-201ENSMUST00000119525 512 ntBASIC15.71■□□□□ 0.11
Trim28Q62318 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC15.71■□□□□ 0.11
Trim28Q62318 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Gm45113-201ENSMUST00000207518 165 ntBASIC15.71■□□□□ 0.11
Trim28Q62318 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC15.71■□□□□ 0.11
Trim28Q62318 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
Trim28Q62318 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trim28Q62318 Gm36970-201ENSMUST00000193688 1859 ntBASIC15.71■□□□□ 0.11
Trim28Q62318 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Trim28Q62318 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim28Q62318 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim28Q62318 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim28Q62318 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC15.71■□□□□ 0.1
Trim28Q62318 Gm19692-201ENSMUST00000203856 2084 ntBASIC15.71■□□□□ 0.1
Trim28Q62318 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim28Q62318 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC15.7■□□□□ 0.1
Trim28Q62318 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC15.7■□□□□ 0.1
Trim28Q62318 Gm24844-201ENSMUST00000158679 127 ntBASIC15.7■□□□□ 0.1
Trim28Q62318 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Gm18367-201ENSMUST00000176139 600 ntBASIC15.7■□□□□ 0.1
Trim28Q62318 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC15.7■□□□□ 0.1
Trim28Q62318 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 AC129219.2-201ENSMUST00000224324 701 ntBASIC15.7■□□□□ 0.1
Trim28Q62318 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim28Q62318 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim28Q62318 CT009757.3-201ENSMUST00000223367 2320 ntBASIC15.69■□□□□ 0.1
Trim28Q62318 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim28Q62318 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim28Q62318 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim28Q62318 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim28Q62318 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim28Q62318 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim28Q62318 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC15.69■□□□□ 0.1
Trim28Q62318 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim28Q62318 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim28Q62318 Gm4726-201ENSMUST00000135604 736 ntBASIC15.69■□□□□ 0.1
Trim28Q62318 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC15.69■□□□□ 0.1
Trim28Q62318 Gm6019-201ENSMUST00000148369 736 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms