Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm11989-201ENSMUST00000117240 672 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm11362-201ENSMUST00000118838 850 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm14585-201ENSMUST00000120713 634 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm13937-201ENSMUST00000121000 988 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm22138-201ENSMUST00000158748 128 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC10.44□□□□□ -0.74
Col8a1Q00780 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm23771-201ENSMUST00000178702 110 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm44329-201ENSMUST00000197469 112 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm43962-201ENSMUST00000203898 190 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm807-202ENSMUST00000224929 408 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm8325-201ENSMUST00000099086 453 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 AC238940.1-201ENSMUST00000225106 1858 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Col8a1Q00780 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm4782-201ENSMUST00000168705 2046 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Col8a1Q00780 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm1848-201ENSMUST00000120711 789 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm22144-201ENSMUST00000157402 102 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Mir1956-201ENSMUST00000157748 65 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm22877-201ENSMUST00000175451 105 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm8494-201ENSMUST00000178171 1233 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Ighv4-2-201ENSMUST00000192975 362 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm5852-201ENSMUST00000194119 1021 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm5542-201ENSMUST00000195485 1089 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm43778-201ENSMUST00000199438 199 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC10.43□□□□□ -0.74
Col8a1Q00780 Mir483-201ENSMUST00000093631 73 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Gm7002-201ENSMUST00000221386 2165 ntBASIC10.43□□□□□ -0.74
Col8a1Q00780 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC10.43□□□□□ -0.74
Col8a1Q00780 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
Col8a1Q00780 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Col8a1Q00780 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Col8a1Q00780 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
Col8a1Q00780 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms