Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC11.73□□□□□ -0.53
Sox3P53784 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sox3P53784 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Sox3P53784 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Sox3P53784 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Sox3P53784 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.72□□□□□ -0.53
Sox3P53784 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC11.72□□□□□ -0.53
Sox3P53784 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC11.72□□□□□ -0.53
Sox3P53784 Gm24749-201ENSMUST00000157838 343 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 AC107638.1-201ENSMUST00000213690 1061 ntBASIC11.72□□□□□ -0.53
Sox3P53784 AC135469.1-201ENSMUST00000225984 772 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Ntng1-201ENSMUST00000051253 327 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC11.72□□□□□ -0.53
Sox3P53784 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Sox3P53784 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Sox3P53784 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sox3P53784 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.72□□□□□ -0.53
Sox3P53784 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Sox3P53784 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.71□□□□□ -0.53
Sox3P53784 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Sox3P53784 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Gm11675-201ENSMUST00000121873 832 ntBASIC11.71□□□□□ -0.53
Sox3P53784 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC11.71□□□□□ -0.53
Sox3P53784 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.71□□□□□ -0.53
Sox3P53784 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC11.71□□□□□ -0.53
Sox3P53784 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC11.71□□□□□ -0.53
Sox3P53784 AC124457.1-201ENSMUST00000198845 120 ntBASIC11.71□□□□□ -0.53
Sox3P53784 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.71□□□□□ -0.53
Sox3P53784 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Gm45224-201ENSMUST00000208203 414 ntBASIC11.71□□□□□ -0.53
Sox3P53784 Gm7207-201ENSMUST00000211575 1067 ntBASIC11.71□□□□□ -0.53
Sox3P53784 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC11.71□□□□□ -0.53
Sox3P53784 AC154849.4-201ENSMUST00000224868 365 ntBASIC11.71□□□□□ -0.53
Sox3P53784 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.71□□□□□ -0.53
Sox3P53784 AC159103.1-201ENSMUST00000228325 429 ntBASIC11.71□□□□□ -0.53
Sox3P53784 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.71□□□□□ -0.53
Sox3P53784 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sox3P53784 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.54
Sox3P53784 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.71□□□□□ -0.54
Sox3P53784 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sox3P53784 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms