Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC18.44■□□□□ 0.54
Cux1P53564 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC18.44■□□□□ 0.54
Cux1P53564 Gm5982-201ENSMUST00000196234 512 ntBASIC18.44■□□□□ 0.54
Cux1P53564 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
Cux1P53564 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC18.44■□□□□ 0.54
Cux1P53564 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 Lgi3-203ENSMUST00000226548 1001 ntBASIC18.44■□□□□ 0.54
Cux1P53564 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Mir483-201ENSMUST00000093631 73 ntBASIC18.44■□□□□ 0.54
Cux1P53564 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
Cux1P53564 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 Gm44758-201ENSMUST00000206096 2068 ntBASIC18.44■□□□□ 0.54
Cux1P53564 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gm14132-201ENSMUST00000117188 1719 ntBASIC18.44■□□□□ 0.54
Cux1P53564 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC18.44■□□□□ 0.54
Cux1P53564 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
Cux1P53564 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC18.44■□□□□ 0.54
Cux1P53564 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gm6114-201ENSMUST00000182472 968 ntBASIC18.44■□□□□ 0.54
Cux1P53564 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gm39288-201ENSMUST00000210554 446 ntBASIC18.44■□□□□ 0.54
Cux1P53564 AC114645.1-201ENSMUST00000215831 187 ntBASIC18.44■□□□□ 0.54
Cux1P53564 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cux1P53564 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC18.44■□□□□ 0.54
Cux1P53564 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Gm36970-201ENSMUST00000193688 1859 ntBASIC18.43■□□□□ 0.54
Cux1P53564 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Cux1P53564 Gm12036-201ENSMUST00000120008 530 ntBASIC18.43■□□□□ 0.54
Cux1P53564 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC18.43■□□□□ 0.54
Cux1P53564 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC18.43■□□□□ 0.54
Cux1P53564 Gm30671-201ENSMUST00000214898 318 ntBASIC18.43■□□□□ 0.54
Cux1P53564 Gm4811-201ENSMUST00000220879 1220 ntBASIC18.43■□□□□ 0.54
Cux1P53564 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Cux1P53564 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cux1P53564 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
Cux1P53564 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC18.42■□□□□ 0.54
Cux1P53564 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 AC093022.4-203ENSMUST00000228523 2657 ntBASIC18.42■□□□□ 0.54
Cux1P53564 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Cux1P53564 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC18.42■□□□□ 0.54
Cux1P53564 Gm13600-201ENSMUST00000117949 744 ntBASIC18.42■□□□□ 0.54
Cux1P53564 Gm12816-201ENSMUST00000118069 1212 ntBASIC18.42■□□□□ 0.54
Cux1P53564 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Gm25951-201ENSMUST00000175330 64 ntBASIC18.42■□□□□ 0.54
Cux1P53564 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Gm18776-201ENSMUST00000188833 654 ntBASIC18.42■□□□□ 0.54
Cux1P53564 Gm9116-201ENSMUST00000192400 1018 ntBASIC18.42■□□□□ 0.54
Cux1P53564 Gm3726-201ENSMUST00000203110 785 ntBASIC18.42■□□□□ 0.54
Cux1P53564 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms