Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Gm45342-201ENSMUST00000210903 1363 ntBASIC14.55□□□□□ -0.08
Rfx1P48377 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC14.55□□□□□ -0.08
Rfx1P48377 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Rfx1P48377 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Rfx1P48377 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC14.55□□□□□ -0.08
Rfx1P48377 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rfx1P48377 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Gm2128-201ENSMUST00000108009 2560 ntBASIC14.54□□□□□ -0.08
Rfx1P48377 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Rfx1P48377 Gm24196-201ENSMUST00000179161 110 ntBASIC14.54□□□□□ -0.08
Rfx1P48377 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Rfx1P48377 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Rfx1P48377 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.54□□□□□ -0.08
Rfx1P48377 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC14.54□□□□□ -0.08
Rfx1P48377 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC14.54□□□□□ -0.08
Rfx1P48377 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC14.54□□□□□ -0.08
Rfx1P48377 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Rfx1P48377 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Rfx1P48377 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC14.53□□□□□ -0.08
Rfx1P48377 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Rfx1P48377 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Rfx1P48377 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Gm7537-201ENSMUST00000221660 1414 ntBASIC14.53□□□□□ -0.08
Rfx1P48377 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC14.53□□□□□ -0.08
Rfx1P48377 Gm3287-205ENSMUST00000228893 1332 ntBASIC14.53□□□□□ -0.08
Rfx1P48377 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC14.53□□□□□ -0.08
Rfx1P48377 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.53□□□□□ -0.08
Rfx1P48377 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.53□□□□□ -0.08
Rfx1P48377 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.53□□□□□ -0.08
Rfx1P48377 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Rfx1P48377 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
Rfx1P48377 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Gm44086-201ENSMUST00000203251 2349 ntBASIC14.53□□□□□ -0.08
Rfx1P48377 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Rfx1P48377 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Rfx1P48377 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
Rfx1P48377 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC14.52□□□□□ -0.08
Rfx1P48377 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Rfx1P48377 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Rfx1P48377 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Rfx1P48377 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Rfx1P48377 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC14.52□□□□□ -0.08
Rfx1P48377 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.52□□□□□ -0.09
Rfx1P48377 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.52□□□□□ -0.09
Rfx1P48377 Gm4271-201ENSMUST00000174444 973 ntBASIC14.52□□□□□ -0.09
Rfx1P48377 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Gm6007-201ENSMUST00000208170 823 ntBASIC14.52□□□□□ -0.09
Rfx1P48377 AC158982.1-201ENSMUST00000228377 901 ntBASIC14.52□□□□□ -0.09
Rfx1P48377 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Rfx1P48377 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Rfx1P48377 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Rfx1P48377 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Rfx1P48377 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Rfx1P48377 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms