Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm17826-201ENSMUST00000189720 798 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Gm42599-201ENSMUST00000201308 469 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.39□□□□□ -0.11
Col3a1P08121 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.39□□□□□ -0.11
Col3a1P08121 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Gm44831-201ENSMUST00000208469 2989 ntBASIC14.39□□□□□ -0.11
Col3a1P08121 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Col3a1P08121 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col3a1P08121 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Gm12419-201ENSMUST00000116649 636 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Gm12795-201ENSMUST00000117594 539 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Gm11783-201ENSMUST00000119549 885 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Gm11836-201ENSMUST00000121022 441 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC14.38□□□□□ -0.11
Col3a1P08121 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC14.38□□□□□ -0.11
Col3a1P08121 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Col3a1P08121 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC14.38□□□□□ -0.11
Col3a1P08121 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Col3a1P08121 Gm23771-201ENSMUST00000178702 110 ntBASIC14.38□□□□□ -0.11
Col3a1P08121 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC14.38□□□□□ -0.11
Col3a1P08121 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC14.38□□□□□ -0.11
Col3a1P08121 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col3a1P08121 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Col3a1P08121 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 AC169511.2-201ENSMUST00000226674 2063 ntBASIC14.37□□□□□ -0.11
Col3a1P08121 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.37□□□□□ -0.11
Col3a1P08121 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC14.37□□□□□ -0.11
Col3a1P08121 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Col3a1P08121 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC14.37□□□□□ -0.11
Col3a1P08121 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Gm16397-201ENSMUST00000122201 494 ntBASIC14.37□□□□□ -0.11
Col3a1P08121 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC14.37□□□□□ -0.11
Col3a1P08121 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
Col3a1P08121 Gm4654-201ENSMUST00000183305 982 ntBASIC14.37□□□□□ -0.11
Col3a1P08121 Gm37299-201ENSMUST00000193951 826 ntBASIC14.37□□□□□ -0.11
Col3a1P08121 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col3a1P08121 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col3a1P08121 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col3a1P08121 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Col3a1P08121 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms