Protein–RNA interactions for Protein: M0QWN7

Usp35, Ubiquitin-specific peptidase 35, mousemouse

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp35M0QWN7 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp35M0QWN7 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp35M0QWN7 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Usp35M0QWN7 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm43375-201ENSMUST00000196705 2480 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm26361-201ENSMUST00000158868 186 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm16296-201ENSMUST00000159905 325 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm27023-201ENSMUST00000182372 285 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Mir6979-201ENSMUST00000183927 56 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm43636-201ENSMUST00000201501 2235 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 AC124433.1-202ENSMUST00000224762 1535 ntBASIC13.17□□□□□ -0.3
Usp35M0QWN7 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Usp35M0QWN7 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Gm14028-201ENSMUST00000117434 479 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Gm13461-201ENSMUST00000120980 662 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Gm14277-201ENSMUST00000121195 360 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 Gm9445-201ENSMUST00000207454 1285 ntBASIC13.16□□□□□ -0.3
Usp35M0QWN7 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Usp35M0QWN7 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 79.8 ms