Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Trim54Q9ERP3 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm5847-201ENSMUST00000178959 1595 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm43417-201ENSMUST00000201586 5207 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 AC153954.1-201ENSMUST00000216959 255 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm5455-201ENSMUST00000058710 715 ntBASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim54Q9ERP3 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm43081-201ENSMUST00000199082 1380 ntBASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm14058-201ENSMUST00000116082 735 ntBASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm29787-201ENSMUST00000222129 849 ntBASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim54Q9ERP3 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Gm12616-201ENSMUST00000118594 382 ntBASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Gm7722-201ENSMUST00000120646 741 ntBASIC13.22□□□□□ -0.29
Trim54Q9ERP3 Gm12624-201ENSMUST00000177615 382 ntBASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms