Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm26361-201ENSMUST00000158868 186 ntBASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm45691-201ENSMUST00000206905 1120 ntBASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Mir433-201ENSMUST00000093564 124 ntBASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm12015-201ENSMUST00000117065 843 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm15236-201ENSMUST00000117309 379 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm14130-201ENSMUST00000118417 987 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm6963-201ENSMUST00000147879 379 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm25700-201ENSMUST00000177693 110 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm2383-201ENSMUST00000181461 807 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm8856-201ENSMUST00000185254 1144 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Dhrs4-202ENSMUST00000226168 828 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm9996-201ENSMUST00000070359 913 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Gm43908-201ENSMUST00000205074 1472 ntBASIC12.53□□□□□ -0.4
Vps28Q9D1C8 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Vps28Q9D1C8 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms