Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm6621-201ENSMUST00000193251 772 ntBASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm18626-201ENSMUST00000221512 1409 ntBASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gm13323-201ENSMUST00000120245 1151 ntBASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gm18711-201ENSMUST00000199341 750 ntBASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Ddx56Q9D0R4 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ddx56Q9D0R4 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ddx56Q9D0R4 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ddx56Q9D0R4 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ddx56Q9D0R4 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.35
Ddx56Q9D0R4 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Rprl1-201ENSMUST00000158050 327 ntBASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Gm2991-201ENSMUST00000173338 480 ntBASIC12.83□□□□□ -0.36
Ddx56Q9D0R4 Gm27516-201ENSMUST00000184237 98 ntBASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms