Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC12.64□□□□□ -0.39
Sox9Q04887 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Sox9Q04887 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Sox9Q04887 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Pcgf5-211ENSMUST00000225920 6443 ntBASIC12.64□□□□□ -0.39
Sox9Q04887 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sox9Q04887 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox9Q04887 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 AC171277.1-201ENSMUST00000216902 1441 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sox9Q04887 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Mir671-201ENSMUST00000102432 98 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sox9Q04887 Gm11979-201ENSMUST00000119629 743 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Rprl1-201ENSMUST00000158050 327 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC12.63□□□□□ -0.39
Sox9Q04887 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 AC136376.2-201ENSMUST00000228819 490 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sox9Q04887 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sox9Q04887 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sox9Q04887 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sox9Q04887 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.63□□□□□ -0.39
Sox9Q04887 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Sox9Q04887 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox9Q04887 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sox9Q04887 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.62□□□□□ -0.39
Sox9Q04887 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm37644-201ENSMUST00000192190 2270 ntBASIC12.62□□□□□ -0.39
Sox9Q04887 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC12.62□□□□□ -0.39
Sox9Q04887 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.62□□□□□ -0.39
Sox9Q04887 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sox9Q04887 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm13328-201ENSMUST00000120816 1020 ntBASIC12.62□□□□□ -0.39
Sox9Q04887 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
Sox9Q04887 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.62□□□□□ -0.39
Sox9Q04887 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sox9Q04887 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm9797-202ENSMUST00000218003 294 ntBASIC12.62□□□□□ -0.39
Sox9Q04887 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Sox9Q04887 Gm5805-201ENSMUST00000072779 456 ntBASIC12.62□□□□□ -0.39
Sox9Q04887 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sox9Q04887 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 96.3 ms