Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Lig3P97386 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Lig3P97386 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.41□□□□□ -0.26
Lig3P97386 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
Lig3P97386 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
Lig3P97386 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lig3P97386 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.41□□□□□ -0.26
Lig3P97386 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Lig3P97386 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Gm5859-201ENSMUST00000165401 2324 ntBASIC13.4□□□□□ -0.26
Lig3P97386 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 AC154404.1-201ENSMUST00000223601 2077 ntBASIC13.4□□□□□ -0.26
Lig3P97386 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC13.4□□□□□ -0.26
Lig3P97386 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Gm44545-201ENSMUST00000208262 746 ntBASIC13.4□□□□□ -0.26
Lig3P97386 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.4□□□□□ -0.26
Lig3P97386 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC13.4□□□□□ -0.26
Lig3P97386 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
Lig3P97386 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Lig3P97386 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
Lig3P97386 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
Lig3P97386 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
Lig3P97386 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.39□□□□□ -0.27
Lig3P97386 AC124577.2-201ENSMUST00000217413 2420 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lig3P97386 Gm13611-201ENSMUST00000118269 318 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Gm13813-201ENSMUST00000120998 787 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.39□□□□□ -0.27
Lig3P97386 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.39□□□□□ -0.27
Lig3P97386 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Lig3P97386 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Gm5051-201ENSMUST00000204085 485 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Gm32025-201ENSMUST00000217960 307 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13.39□□□□□ -0.27
Lig3P97386 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.39□□□□□ -0.27
Lig3P97386 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Lig3P97386 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lig3P97386 Gm37513-201ENSMUST00000194830 2268 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Gm38378-201ENSMUST00000195153 2268 ntBASIC13.39□□□□□ -0.27
Lig3P97386 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms