Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.78□□□□□ -0.52
Tnfsf4P43488 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Gm6222-202ENSMUST00000182143 629 ntBASIC11.78□□□□□ -0.52
Tnfsf4P43488 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Gm39404-201ENSMUST00000216350 313 ntBASIC11.78□□□□□ -0.52
Tnfsf4P43488 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.78□□□□□ -0.52
Tnfsf4P43488 Gm26232-201ENSMUST00000083360 166 ntBASIC11.78□□□□□ -0.52
Tnfsf4P43488 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.78□□□□□ -0.52
Tnfsf4P43488 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Tnfsf4P43488 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Tnfsf4P43488 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm25927-201ENSMUST00000175058 117 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm3890-201ENSMUST00000182416 207 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm38230-201ENSMUST00000193572 1159 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm40466-201ENSMUST00000212174 422 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 AC122459.1-201ENSMUST00000228373 885 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm15163-201ENSMUST00000120749 1302 ntBASIC11.77□□□□□ -0.53
Tnfsf4P43488 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Tnfsf4P43488 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Tnfsf4P43488 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.76□□□□□ -0.53
Tnfsf4P43488 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.76□□□□□ -0.53
Tnfsf4P43488 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.76□□□□□ -0.53
Tnfsf4P43488 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Tnfsf4P43488 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms