Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC11.68□□□□□ -0.54
Lire1P11260 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.68□□□□□ -0.54
Lire1P11260 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Mir3102-201ENSMUST00000175555 104 ntBASIC11.68□□□□□ -0.54
Lire1P11260 Gm7584-201ENSMUST00000175829 940 ntBASIC11.68□□□□□ -0.54
Lire1P11260 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.68□□□□□ -0.54
Lire1P11260 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Lire1P11260 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Gm43931-201ENSMUST00000204817 2870 ntBASIC11.68□□□□□ -0.54
Lire1P11260 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC11.67□□□□□ -0.54
Lire1P11260 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC11.67□□□□□ -0.54
Lire1P11260 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Gm6124-201ENSMUST00000188240 2580 ntBASIC11.67□□□□□ -0.54
Lire1P11260 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.67□□□□□ -0.54
Lire1P11260 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.67□□□□□ -0.54
Lire1P11260 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC11.67□□□□□ -0.54
Lire1P11260 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Gm38241-201ENSMUST00000192641 898 ntBASIC11.67□□□□□ -0.54
Lire1P11260 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
Lire1P11260 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC11.67□□□□□ -0.54
Lire1P11260 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Lire1P11260 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Marveld2-204ENSMUST00000225754 3111 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Lire1P11260 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Gm37593-201ENSMUST00000191669 3254 ntBASIC11.67□□□□□ -0.54
Lire1P11260 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
Lire1P11260 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC11.67□□□□□ -0.54
Lire1P11260 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Lire1P11260 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Gm17980-201ENSMUST00000217977 2349 ntBASIC11.66□□□□□ -0.54
Lire1P11260 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Wdcp-201ENSMUST00000053034 2892 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Atl2-201ENSMUST00000068282 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 AC154352.1-201ENSMUST00000221477 2365 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Gm2231-201ENSMUST00000125661 612 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
Lire1P11260 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.66□□□□□ -0.54
Lire1P11260 Gm27516-201ENSMUST00000184237 98 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC11.66□□□□□ -0.54
Lire1P11260 Gm43758-201ENSMUST00000199500 367 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.66□□□□□ -0.54
Lire1P11260 Olfr284-202ENSMUST00000206647 966 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.66□□□□□ -0.54
Lire1P11260 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC11.66□□□□□ -0.54
Lire1P11260 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Lire1P11260 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms