Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.22□□□□□ -0.29
Vti1aO89116 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.22□□□□□ -0.29
Vti1aO89116 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.22□□□□□ -0.29
Vti1aO89116 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.22□□□□□ -0.29
Vti1aO89116 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Vti1aO89116 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vti1aO89116 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
Vti1aO89116 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Vti1aO89116 Gm11597-201ENSMUST00000121423 964 ntBASIC13.21□□□□□ -0.29
Vti1aO89116 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
Vti1aO89116 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.21□□□□□ -0.29
Vti1aO89116 Gm5732-201ENSMUST00000182596 1007 ntBASIC13.21□□□□□ -0.29
Vti1aO89116 Gm27627-201ENSMUST00000183644 150 ntBASIC13.21□□□□□ -0.29
Vti1aO89116 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.21□□□□□ -0.29
Vti1aO89116 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.21□□□□□ -0.29
Vti1aO89116 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Gm39404-201ENSMUST00000216350 313 ntBASIC13.21□□□□□ -0.29
Vti1aO89116 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.21□□□□□ -0.29
Vti1aO89116 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Vti1aO89116 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Vti1aO89116 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vti1aO89116 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Vti1aO89116 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vti1aO89116 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.2□□□□□ -0.3
Vti1aO89116 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Vti1aO89116 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
Vti1aO89116 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Vti1aO89116 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Gm27552-201ENSMUST00000183351 62 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 Gm27844-201ENSMUST00000183613 62 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Vti1aO89116 Ighv5-7-201ENSMUST00000192302 244 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 Gm7003-201ENSMUST00000195089 312 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 Gm44100-201ENSMUST00000204329 436 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 Gm45598-202ENSMUST00000210719 986 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.2□□□□□ -0.3
Vti1aO89116 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.2□□□□□ -0.3
Vti1aO89116 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC13.2□□□□□ -0.3
Vti1aO89116 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Vti1aO89116 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.2□□□□□ -0.3
Vti1aO89116 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vti1aO89116 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Vti1aO89116 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms