Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Usp40Q8BWR4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
Usp40Q8BWR4 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC28.87■■■□□ 2.21
Usp40Q8BWR4 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Usp40Q8BWR4 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
Usp40Q8BWR4 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Usp40Q8BWR4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Usp40Q8BWR4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
Usp40Q8BWR4 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Usp40Q8BWR4 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Usp40Q8BWR4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Usp40Q8BWR4 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
Usp40Q8BWR4 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Usp40Q8BWR4 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC28.85■■■□□ 2.21
Usp40Q8BWR4 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC28.85■■■□□ 2.21
Usp40Q8BWR4 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Usp40Q8BWR4 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Usp40Q8BWR4 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC28.84■■■□□ 2.21
Usp40Q8BWR4 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Usp40Q8BWR4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Usp40Q8BWR4 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
Usp40Q8BWR4 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC28.83■■■□□ 2.21
Usp40Q8BWR4 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC28.83■■■□□ 2.21
Usp40Q8BWR4 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC28.83■■■□□ 2.21
Usp40Q8BWR4 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Usp40Q8BWR4 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC28.81■■■□□ 2.2
Usp40Q8BWR4 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Usp40Q8BWR4 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC28.81■■■□□ 2.2
Usp40Q8BWR4 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Usp40Q8BWR4 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Usp40Q8BWR4 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Usp40Q8BWR4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Usp40Q8BWR4 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Usp40Q8BWR4 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
Usp40Q8BWR4 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Usp40Q8BWR4 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Usp40Q8BWR4 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Gm43137-201ENSMUST00000198052 594 ntBASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Gm42418-201ENSMUST00000182010 1831 ntBASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Usp40Q8BWR4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
Usp40Q8BWR4 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
Usp40Q8BWR4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
Usp40Q8BWR4 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Usp40Q8BWR4 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Usp40Q8BWR4 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Usp40Q8BWR4 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC28.75■■■□□ 2.19
Usp40Q8BWR4 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC28.75■■■□□ 2.19
Usp40Q8BWR4 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Usp40Q8BWR4 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Usp40Q8BWR4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Usp40Q8BWR4 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
Usp40Q8BWR4 Gm6139-201ENSMUST00000079261 882 ntBASIC28.73■■■□□ 2.19
Usp40Q8BWR4 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC28.72■■■□□ 2.19
Usp40Q8BWR4 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Usp40Q8BWR4 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
Usp40Q8BWR4 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Usp40Q8BWR4 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
Usp40Q8BWR4 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
Usp40Q8BWR4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC28.7■■■□□ 2.19
Usp40Q8BWR4 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Usp40Q8BWR4 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC28.7■■■□□ 2.18
Usp40Q8BWR4 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Usp40Q8BWR4 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
Usp40Q8BWR4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Gm8770-201ENSMUST00000121113 1109 ntBASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Usp40Q8BWR4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
Usp40Q8BWR4 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Usp40Q8BWR4 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC28.68■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms