Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Gm8093-201ENSMUST00000128935 1892 ntBASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Gm7417-201ENSMUST00000192950 473 ntBASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Gm10399-202ENSMUST00000202768 748 ntBASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Smarca1Q6PGB8 Kdm3b-204ENSMUST00000224715 2032 ntBASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Gm40881-201ENSMUST00000223397 166 ntBASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Smarca1Q6PGB8 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Smarca1Q6PGB8 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC23.15■■□□□ 1.3
Smarca1Q6PGB8 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Smarca1Q6PGB8 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Smarca1Q6PGB8 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Smarca1Q6PGB8 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.3
Smarca1Q6PGB8 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Smarca1Q6PGB8 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 AC164883.3-201ENSMUST00000227396 1774 ntBASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Smarca1Q6PGB8 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Smarca1Q6PGB8 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Smarca1Q6PGB8 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC23.13■■□□□ 1.29
Smarca1Q6PGB8 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Smarca1Q6PGB8 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Smarca1Q6PGB8 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Smarca1Q6PGB8 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.12■■□□□ 1.29
Smarca1Q6PGB8 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Smarca1Q6PGB8 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Smarca1Q6PGB8 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Smarca1Q6PGB8 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Smarca1Q6PGB8 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
Smarca1Q6PGB8 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Smarca1Q6PGB8 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Smarca1Q6PGB8 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Smarca1Q6PGB8 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Smarca1Q6PGB8 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Smarca1Q6PGB8 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Smarca1Q6PGB8 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Smarca1Q6PGB8 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.08■■□□□ 1.29
Smarca1Q6PGB8 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Smarca1Q6PGB8 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Smarca1Q6PGB8 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC23.06■■□□□ 1.28
Smarca1Q6PGB8 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC23.06■■□□□ 1.28
Smarca1Q6PGB8 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Smarca1Q6PGB8 AC158990.1-201ENSMUST00000221450 2016 ntBASIC23.06■■□□□ 1.28
Smarca1Q6PGB8 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Smarca1Q6PGB8 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Smarca1Q6PGB8 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC23.05■■□□□ 1.28
Smarca1Q6PGB8 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Smarca1Q6PGB8 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Hsf1-207ENSMUST00000228371 2102 ntBASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 74.6 ms