Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Lire1P11260 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Lire1P11260 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lire1P11260 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lire1P11260 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lire1P11260 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Lire1P11260 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lire1P11260 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Lire1P11260 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lire1P11260 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Lire1P11260 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Lire1P11260 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Lire1P11260 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lire1P11260 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Lire1P11260 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Lire1P11260 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Lire1P11260 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lire1P11260 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Lire1P11260 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lire1P11260 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Gm10232-201ENSMUST00000089221 720 ntBASIC19.33■□□□□ 0.68
Lire1P11260 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.33■□□□□ 0.68
Lire1P11260 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lire1P11260 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Lire1P11260 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Lire1P11260 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lire1P11260 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lire1P11260 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.31■□□□□ 0.68
Lire1P11260 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lire1P11260 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lire1P11260 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.31■□□□□ 0.68
Lire1P11260 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lire1P11260 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lire1P11260 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Lire1P11260 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Lire1P11260 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Lire1P11260 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.3■□□□□ 0.68
Lire1P11260 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Lire1P11260 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lire1P11260 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lire1P11260 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lire1P11260 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.29■□□□□ 0.68
Lire1P11260 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.29■□□□□ 0.68
Lire1P11260 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lire1P11260 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.29■□□□□ 0.68
Lire1P11260 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lire1P11260 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Lire1P11260 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Lire1P11260 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lire1P11260 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Lire1P11260 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Lire1P11260 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Lire1P11260 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Lire1P11260 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lire1P11260 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lire1P11260 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Lire1P11260 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lire1P11260 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Lire1P11260 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lire1P11260 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lire1P11260 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Lire1P11260 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lire1P11260 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lire1P11260 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Lire1P11260 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.26■□□□□ 0.67
Lire1P11260 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Lire1P11260 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Lire1P11260 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lire1P11260 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lire1P11260 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms