Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm18198-201ENSMUST00000204986 1551 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Scn11aQ9R053 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC14.27□□□□□ -0.12
Scn11aQ9R053 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Scn11aQ9R053 Gm14193-201ENSMUST00000105067 153 ntBASIC14.27□□□□□ -0.12
Scn11aQ9R053 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Scn11aQ9R053 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Scn11aQ9R053 Gm8737-201ENSMUST00000122208 642 ntBASIC14.27□□□□□ -0.12
Scn11aQ9R053 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Scn11aQ9R053 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC14.27□□□□□ -0.13
Scn11aQ9R053 Gm43752-201ENSMUST00000198475 697 ntBASIC14.27□□□□□ -0.13
Scn11aQ9R053 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC14.27□□□□□ -0.13
Scn11aQ9R053 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Gm3619-201ENSMUST00000219947 775 ntBASIC14.27□□□□□ -0.13
Scn11aQ9R053 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Scn11aQ9R053 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 AC138329.2-201ENSMUST00000225579 1842 ntBASIC14.26□□□□□ -0.13
Scn11aQ9R053 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Gm4879-201ENSMUST00000122190 1272 ntBASIC14.26□□□□□ -0.13
Scn11aQ9R053 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Scn11aQ9R053 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Scn11aQ9R053 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Scn11aQ9R053 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Gm18159-201ENSMUST00000174516 1070 ntBASIC14.25□□□□□ -0.13
Scn11aQ9R053 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC14.25□□□□□ -0.13
Scn11aQ9R053 Gm25201-201ENSMUST00000083093 170 ntBASIC14.25□□□□□ -0.13
Scn11aQ9R053 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 58.8 ms