Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm18626-201ENSMUST00000221512 1409 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm24934-201ENSMUST00000103764 111 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm23119-201ENSMUST00000158610 140 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm9678-201ENSMUST00000198979 1149 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm18056-201ENSMUST00000207670 568 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm18061-201ENSMUST00000208350 562 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm18063-201ENSMUST00000208529 568 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm18052-201ENSMUST00000208750 559 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm44942-201ENSMUST00000096093 2072 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm43868-201ENSMUST00000205187 2114 ntBASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps28Q9D1C8 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 AC122197.2-201ENSMUST00000219196 1635 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Gm5070-201ENSMUST00000177599 862 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 AC123665.1-201ENSMUST00000228204 438 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.55□□□□□ -0.4
Vps28Q9D1C8 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps28Q9D1C8 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms