Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Gm45575-201ENSMUST00000210283 548 ntBASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Gm6189-201ENSMUST00000164487 2082 ntBASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Usp40Q8BWR4 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Gm21998-201ENSMUST00000117552 1308 ntBASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Gm11660-201ENSMUST00000120955 412 ntBASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Gm43916-201ENSMUST00000205062 967 ntBASIC16.71■□□□□ 0.27
Usp40Q8BWR4 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Usp40Q8BWR4 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Usp40Q8BWR4 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Usp40Q8BWR4 AC130671.2-201ENSMUST00000227224 1621 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 AC129931.1-201ENSMUST00000228865 1861 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm15573-201ENSMUST00000119487 540 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm11667-201ENSMUST00000119828 486 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Mup-ps26-201ENSMUST00000121751 202 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm4310-201ENSMUST00000177847 889 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 AC135469.1-201ENSMUST00000225984 772 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm10179-201ENSMUST00000086233 688 ntBASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Usp40Q8BWR4 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 AC091458.1-201ENSMUST00000220902 1361 ntBASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms