Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Gm44942-201ENSMUST00000096093 2072 ntBASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ccdc40Q8BI79 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm13829-201ENSMUST00000119600 138 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm9431-201ENSMUST00000119765 1051 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm11591-201ENSMUST00000120063 702 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm14760-201ENSMUST00000121831 999 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Rmrp-201ENSMUST00000157463 271 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gm5781-201ENSMUST00000219792 443 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 AC126253.1-201ENSMUST00000227974 824 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 AC167013.1-201ENSMUST00000228592 202 ntBASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ccdc40Q8BI79 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.83□□□□□ -0.35
Ccdc40Q8BI79 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ccdc40Q8BI79 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ccdc40Q8BI79 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm11964-201ENSMUST00000120982 444 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm44124-201ENSMUST00000204159 472 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm5904-201ENSMUST00000210286 865 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Snora73a-201ENSMUST00000082453 205 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ccdc40Q8BI79 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 68.3 ms