Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Gm11451-201ENSMUST00000118946 630 ntBASIC21.28■■□□□ 1
Trim41Q5NCC3 Gm12196-201ENSMUST00000120954 262 ntBASIC21.28■■□□□ 1
Trim41Q5NCC3 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Ginm1-202ENSMUST00000065124 300 ntBASIC21.28■■□□□ 1
Trim41Q5NCC3 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 AC171277.1-201ENSMUST00000216902 1441 ntBASIC21.28■■□□□ 1
Trim41Q5NCC3 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm11511-201ENSMUST00000118146 540 ntBASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm13937-201ENSMUST00000121000 988 ntBASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm13022-201ENSMUST00000121181 285 ntBASIC21.27■■□□□ 1
Trim41Q5NCC3 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm4482-201ENSMUST00000200876 742 ntBASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm6781-201ENSMUST00000038304 1242 ntBASIC21.27■■□□□ 1
Trim41Q5NCC3 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Gm26448-201ENSMUST00000082446 203 ntBASIC21.27■■□□□ 1
Trim41Q5NCC3 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Trim41Q5NCC3 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Trim41Q5NCC3 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
Trim41Q5NCC3 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim41Q5NCC3 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Trim41Q5NCC3 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm18782-201ENSMUST00000209023 1399 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm26286-201ENSMUST00000104166 134 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm14219-201ENSMUST00000120414 288 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm7722-201ENSMUST00000120646 741 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm8343-201ENSMUST00000182705 994 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm7985-201ENSMUST00000183329 981 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Mir6941-201ENSMUST00000184711 59 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm3332-201ENSMUST00000189337 928 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Trav11n-201ENSMUST00000200113 343 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm45696-201ENSMUST00000212088 985 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Gm37644-201ENSMUST00000192190 2270 ntBASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim41Q5NCC3 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms