Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 H2-Q3-201ENSMUST00000172583 608 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm10774-201ENSMUST00000188689 204 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm42779-201ENSMUST00000198807 406 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm4482-201ENSMUST00000200876 742 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm7395-201ENSMUST00000216059 1045 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm6867-201ENSMUST00000219165 425 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Gm7551-201ENSMUST00000089593 1074 ntBASIC10.48□□□□□ -0.73
Col8a1Q00780 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
Col8a1Q00780 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Col8a1Q00780 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 AC130671.2-201ENSMUST00000227224 1621 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm22133-201ENSMUST00000102082 109 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm23596-201ENSMUST00000104304 132 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Mir7677-201ENSMUST00000184226 67 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm42937-201ENSMUST00000197360 752 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm6905-201ENSMUST00000205729 511 ntBASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Col8a1Q00780 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Col8a1Q00780 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms