Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.14
Traf1P39428 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Traf1P39428 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
Traf1P39428 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Traf1P39428 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Traf1P39428 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Traf1P39428 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Traf1P39428 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Gm18227-201ENSMUST00000211082 1468 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Traf1P39428 Gm11989-201ENSMUST00000117240 672 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Gm11362-201ENSMUST00000118838 850 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC14.2□□□□□ -0.14
Traf1P39428 Gm24749-201ENSMUST00000157838 343 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Gm17040-202ENSMUST00000170597 889 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Mir5120-201ENSMUST00000175020 78 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Abhd11os-203ENSMUST00000222613 363 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Traf1P39428 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.2□□□□□ -0.14
Traf1P39428 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Traf1P39428 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Traf1P39428 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC14.19□□□□□ -0.14
Traf1P39428 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Traf1P39428 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Traf1P39428 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Traf1P39428 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC14.19□□□□□ -0.14
Traf1P39428 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC14.19□□□□□ -0.14
Traf1P39428 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.19□□□□□ -0.14
Traf1P39428 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.19□□□□□ -0.14
Traf1P39428 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Traf1P39428 AC153974.2-201ENSMUST00000218577 1025 ntBASIC14.19□□□□□ -0.14
Traf1P39428 CT025694.1-201ENSMUST00000226188 934 ntBASIC14.19□□□□□ -0.14
Traf1P39428 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Traf1P39428 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.19□□□□□ -0.14
Traf1P39428 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Traf1P39428 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Traf1P39428 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC14.18□□□□□ -0.14
Traf1P39428 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Traf1P39428 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.18□□□□□ -0.14
Traf1P39428 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC14.18□□□□□ -0.14
Traf1P39428 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC14.18□□□□□ -0.14
Traf1P39428 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms