Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm38384-201ENSMUST00000195413 1122 ntBASIC11.82□□□□□ -0.52
Msx1P13297 4922502N22Rik-201ENSMUST00000204038 1149 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Gm44738-201ENSMUST00000206393 371 ntTSL 2 BASIC11.82□□□□□ -0.52
Msx1P13297 Scoc-209ENSMUST00000212905 798 ntAPPRIS P3 TSL 3 BASIC11.82□□□□□ -0.52
Msx1P13297 AC153932.1-201ENSMUST00000218558 787 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.82□□□□□ -0.52
Msx1P13297 CT009718.3-201ENSMUST00000221116 367 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 9230110F15Rik-201ENSMUST00000054175 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Elobl-201ENSMUST00000061938 819 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 AC158595.1-201ENSMUST00000217989 1435 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Msx1P13297 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm8617-201ENSMUST00000118796 2222 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Msx1P13297 Gm25214-201ENSMUST00000104573 129 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC11.81□□□□□ -0.52
Msx1P13297 Gm14208-201ENSMUST00000119645 678 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.81□□□□□ -0.52
Msx1P13297 4930551O13Rik-201ENSMUST00000145585 1065 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm15200-201ENSMUST00000149950 410 ntTSL 2 BASIC11.81□□□□□ -0.52
Msx1P13297 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm25732-201ENSMUST00000175168 60 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Msx1P13297 Gm28450-201ENSMUST00000187349 638 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Gm37517-201ENSMUST00000194004 1289 ntBASIC11.81□□□□□ -0.52
Msx1P13297 4930459L07Rik-201ENSMUST00000199751 420 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Msx1P13297 Higd1a-202ENSMUST00000213124 713 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 AC154441.1-201ENSMUST00000223653 1006 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Msx1P13297 Spata4-201ENSMUST00000033917 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm22005-201ENSMUST00000082795 141 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Gm37324-201ENSMUST00000194500 4504 ntBASIC11.81□□□□□ -0.52
Msx1P13297 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Msx1P13297 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msx1P13297 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Snord83b-201ENSMUST00000104546 94 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Gm15547-201ENSMUST00000122152 333 ntBASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms