Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.7□□□□□ -0.54
Lire1P11260 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gm16570-201ENSMUST00000161951 436 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Mir8109-201ENSMUST00000184375 117 ntBASIC11.7□□□□□ -0.54
Lire1P11260 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Lire1P11260 Gm43133-201ENSMUST00000197472 463 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Gm18935-201ENSMUST00000212692 664 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Gm9368-201ENSMUST00000219348 831 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gm9823-201ENSMUST00000051212 327 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Lire1P11260 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Gm45828-201ENSMUST00000206938 1836 ntBASIC11.7□□□□□ -0.54
Lire1P11260 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Gm36908-201ENSMUST00000218080 1662 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Gm11618-201ENSMUST00000117946 267 ntBASIC11.69□□□□□ -0.54
Lire1P11260 Gm12241-201ENSMUST00000118330 726 ntBASIC11.69□□□□□ -0.54
Lire1P11260 Gm11793-201ENSMUST00000120433 981 ntBASIC11.69□□□□□ -0.54
Lire1P11260 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC11.69□□□□□ -0.54
Lire1P11260 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.69□□□□□ -0.54
Lire1P11260 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC11.69□□□□□ -0.54
Lire1P11260 Gm45930-201ENSMUST00000221330 292 ntBASIC11.69□□□□□ -0.54
Lire1P11260 AC140406.1-201ENSMUST00000226481 465 ntBASIC11.69□□□□□ -0.54
Lire1P11260 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.69□□□□□ -0.54
Lire1P11260 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Lire1P11260 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC11.69□□□□□ -0.54
Lire1P11260 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Lire1P11260 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Tmed9-203ENSMUST00000224741 1450 ntBASIC11.69□□□□□ -0.54
Lire1P11260 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Lire1P11260 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.68□□□□□ -0.54
Lire1P11260 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC11.68□□□□□ -0.54
Lire1P11260 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC11.68□□□□□ -0.54
Lire1P11260 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Lire1P11260 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Lire1P11260 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms