Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm37513-201ENSMUST00000194830 2268 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 Gm38378-201ENSMUST00000195153 2268 ntBASIC10.12□□□□□ -0.79
Hmgb3O54879 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Hmgb3O54879 Celf1-208ENSMUST00000111455 7579 ntAPPRIS P4 TSL 5 BASIC10.12□□□□□ -0.79
Hmgb3O54879 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Dicer1-201ENSMUST00000041987 9851 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Ern1-201ENSMUST00000001059 6946 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Tecpr2-202ENSMUST00000169597 7780 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 AC164426.2-201ENSMUST00000225993 2492 ntBASIC10.11□□□□□ -0.79
Hmgb3O54879 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm21854-201ENSMUST00000179901 471 ntBASIC10.11□□□□□ -0.79
Hmgb3O54879 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC10.11□□□□□ -0.79
Hmgb3O54879 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC10.11□□□□□ -0.79
Hmgb3O54879 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC10.11□□□□□ -0.79
Hmgb3O54879 AC155258.1-201ENSMUST00000219303 253 ntBASIC10.11□□□□□ -0.79
Hmgb3O54879 AC192088.1-201ENSMUST00000227561 301 ntBASIC10.11□□□□□ -0.79
Hmgb3O54879 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
Hmgb3O54879 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Pxdn-208ENSMUST00000220271 6377 ntTSL 5 BASIC10.11□□□□□ -0.79
Hmgb3O54879 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gm44260-201ENSMUST00000204946 2094 ntBASIC10.11□□□□□ -0.79
Hmgb3O54879 Ptpn21-201ENSMUST00000085116 5696 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Hmgb3O54879 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm6263-201ENSMUST00000120029 1342 ntBASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Hcfc1-202ENSMUST00000114372 8262 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm30132-201ENSMUST00000212816 8757 ntTSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Olfr366-202ENSMUST00000214897 5333 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm44086-201ENSMUST00000203251 2349 ntBASIC10.1□□□□□ -0.79
Hmgb3O54879 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm2213-201ENSMUST00000197485 688 ntBASIC10.1□□□□□ -0.79
Hmgb3O54879 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 AC122305.4-201ENSMUST00000216159 1206 ntBASIC10.1□□□□□ -0.79
Hmgb3O54879 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Ppp1r26-205ENSMUST00000189694 5463 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Ppp1r26-201ENSMUST00000040324 5466 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Ddx21-201ENSMUST00000045866 4722 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
Hmgb3O54879 Wipf2-201ENSMUST00000037480 7011 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 164.8 ms