Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Gm7278-201ENSMUST00000119836 1401 ntBASIC14.3□□□□□ -0.12
Scn11aQ9R053 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC14.3□□□□□ -0.12
Scn11aQ9R053 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn11aQ9R053 n-R5s84-201ENSMUST00000122591 109 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm19091-201ENSMUST00000208120 978 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm6903-201ENSMUST00000160509 1366 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm7224-201ENSMUST00000121359 2066 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm15036-201ENSMUST00000118880 400 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm23771-201ENSMUST00000178702 110 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm43778-201ENSMUST00000199438 199 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm7504-201ENSMUST00000201449 424 ntBASIC14.29□□□□□ -0.12
Scn11aQ9R053 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn11aQ9R053 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm45199-201ENSMUST00000207640 1507 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm11783-201ENSMUST00000119549 885 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm11960-201ENSMUST00000122068 925 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm25604-201ENSMUST00000158359 133 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm3551-201ENSMUST00000190750 664 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm5852-201ENSMUST00000194119 1021 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm5542-201ENSMUST00000195485 1089 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 CT485606.1-201ENSMUST00000213187 878 ntBASIC14.28□□□□□ -0.12
Scn11aQ9R053 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Scn11aQ9R053 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms