Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Ube3bQ9ES34 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ube3bQ9ES34 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.58□□□□□ -0.08
Ube3bQ9ES34 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Gm18893-201ENSMUST00000198416 943 ntBASIC14.57□□□□□ -0.08
Ube3bQ9ES34 AU022133-201ENSMUST00000200601 873 ntBASIC14.57□□□□□ -0.08
Ube3bQ9ES34 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ube3bQ9ES34 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Gm14132-201ENSMUST00000117188 1719 ntBASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Mir5120-201ENSMUST00000175020 78 ntBASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Gm5706-201ENSMUST00000181525 993 ntBASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ube3bQ9ES34 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Gm5053-201ENSMUST00000208361 1678 ntBASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Ube3bQ9ES34 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms