Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Snord83b-201ENSMUST00000104546 94 ntBASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Gm14921-201ENSMUST00000118643 908 ntBASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Gm29127-201ENSMUST00000188304 517 ntBASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lima1Q9ERG0 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm7029-201ENSMUST00000173226 450 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm5896-201ENSMUST00000189662 1024 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm8099-201ENSMUST00000200510 742 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm4768-201ENSMUST00000206199 686 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.09□□□□□ -0.47
Lima1Q9ERG0 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lima1Q9ERG0 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms