Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Trim41Q5NCC3 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim41Q5NCC3 Gm38355-201ENSMUST00000192514 1570 ntBASIC21.31■■□□□ 1
Trim41Q5NCC3 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC21.31■■□□□ 1
Trim41Q5NCC3 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Trim41Q5NCC3 AC154262.2-202ENSMUST00000225158 1331 ntBASIC21.31■■□□□ 1
Trim41Q5NCC3 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Trim41Q5NCC3 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm12990-201ENSMUST00000120372 468 ntBASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC21.31■■□□□ 1
Trim41Q5NCC3 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm20825-201ENSMUST00000178149 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
Trim41Q5NCC3 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC21.31■■□□□ 1
Trim41Q5NCC3 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm28719-201ENSMUST00000187779 1757 ntBASIC21.31■■□□□ 1
Trim41Q5NCC3 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim41Q5NCC3 Gm13812-201ENSMUST00000118061 1347 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm13810-201ENSMUST00000118584 1347 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Trim41Q5NCC3 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC21.3■■□□□ 1
Trim41Q5NCC3 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trim41Q5NCC3 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 AC126262.1-201ENSMUST00000221802 1904 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm23596-201ENSMUST00000104304 132 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC21.3■■□□□ 1
Trim41Q5NCC3 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm14274-201ENSMUST00000117182 615 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC21.3■■□□□ 1
Trim41Q5NCC3 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm11979-201ENSMUST00000119629 743 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm11941-201ENSMUST00000119904 610 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Mir1956-201ENSMUST00000157748 65 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm25881-201ENSMUST00000157783 103 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Gm18711-201ENSMUST00000199341 750 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 AC153954.1-201ENSMUST00000216959 255 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 CT571245.2-201ENSMUST00000218421 305 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 AC133602.1-201ENSMUST00000227510 509 ntBASIC21.3■■□□□ 1
Trim41Q5NCC3 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim41Q5NCC3 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Trim41Q5NCC3 Gm7049-201ENSMUST00000223520 1712 ntBASIC21.29■■□□□ 1
Trim41Q5NCC3 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trim41Q5NCC3 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Gm14913-201ENSMUST00000120011 1093 ntBASIC21.29■■□□□ 1
Trim41Q5NCC3 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Trim41Q5NCC3 Gm45500-201ENSMUST00000211676 803 ntBASIC21.29■■□□□ 1
Trim41Q5NCC3 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim41Q5NCC3 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Trim41Q5NCC3 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim41Q5NCC3 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms