Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3aQ3ULJ3 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3aQ3ULJ3 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Upf3aQ3ULJ3 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
Upf3aQ3ULJ3 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3aQ3ULJ3 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3aQ3ULJ3 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Upf3aQ3ULJ3 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Upf3aQ3ULJ3 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.9□□□□□ -0.35
Upf3aQ3ULJ3 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.9□□□□□ -0.35
Upf3aQ3ULJ3 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.9□□□□□ -0.35
Upf3aQ3ULJ3 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Upf3aQ3ULJ3 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm45219-201ENSMUST00000205602 465 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm9797-202ENSMUST00000218003 294 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 AC122408.1-201ENSMUST00000218949 218 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm5705-201ENSMUST00000066241 711 ntBASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Upf3aQ3ULJ3 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm28686-201ENSMUST00000187404 609 ntBASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm45398-201ENSMUST00000210561 165 ntBASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Upf3aQ3ULJ3 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms