Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxc4Q08624 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Hoxc4Q08624 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Hoxc4Q08624 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm24891-201ENSMUST00000104391 136 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm14058-201ENSMUST00000116082 735 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm7851-201ENSMUST00000117574 323 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm15004-201ENSMUST00000119192 630 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm5732-201ENSMUST00000182596 1007 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm5733-201ENSMUST00000190232 939 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 AC121960.1-201ENSMUST00000227982 564 ntBASIC11.77□□□□□ -0.53
Hoxc4Q08624 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Hoxc4Q08624 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Gm6506-201ENSMUST00000119775 1136 ntBASIC11.76□□□□□ -0.53
Hoxc4Q08624 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Ighv1-48-201ENSMUST00000191795 294 ntBASIC11.76□□□□□ -0.53
Hoxc4Q08624 Gm42997-202ENSMUST00000200321 985 ntBASIC11.76□□□□□ -0.53
Hoxc4Q08624 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 AC129931.1-201ENSMUST00000228865 1861 ntBASIC11.76□□□□□ -0.53
Hoxc4Q08624 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Hoxc4Q08624 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Hoxc4Q08624 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms