Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm5916-201ENSMUST00000168452 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm3715-201ENSMUST00000172308 617 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Esp16-201ENSMUST00000178037 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Vmn1r-ps78-201ENSMUST00000178185 924 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Vmn1r-ps76-201ENSMUST00000179492 924 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm37306-201ENSMUST00000193447 1233 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm37782-201ENSMUST00000194879 678 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm2474-201ENSMUST00000195162 559 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm2965-201ENSMUST00000198365 343 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm32884-201ENSMUST00000205528 732 ntTSL 5 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm18256-201ENSMUST00000209087 907 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm8342-201ENSMUST00000209839 757 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Olfr829-201ENSMUST00000058411 966 ntAPPRIS P2 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Fthl17e-201ENSMUST00000096509 841 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm13192-201ENSMUST00000101199 208 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Cav2-203ENSMUST00000115462 694 ntTSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm10443-201ENSMUST00000119024 210 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.3□□□□□ -0.44
Col9a1Q05722 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 1700085C21Rik-201ENSMUST00000187123 1082 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm37851-201ENSMUST00000193871 889 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm20568-201ENSMUST00000197129 208 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm18514-201ENSMUST00000218980 436 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 AC154646.1-201ENSMUST00000225011 1092 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 AC154361.1-201ENSMUST00000225694 745 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 AC130477.1-201ENSMUST00000226982 420 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Stap1-201ENSMUST00000031171 909 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 3830403N18Rik-201ENSMUST00000033458 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm17415-201ENSMUST00000096427 789 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm18210-201ENSMUST00000209001 1524 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Gm26513-201ENSMUST00000181802 2489 ntBASIC12.3□□□□□ -0.44
Col9a1Q05722 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Col9a1Q05722 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC12.3□□□□□ -0.44
Col9a1Q05722 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms