Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
Sox9Q04887 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC12.68□□□□□ -0.38
Sox9Q04887 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Gm15703-201ENSMUST00000120250 880 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Gm21092-201ENSMUST00000178995 955 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Gm4654-201ENSMUST00000183305 982 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Gm8531-201ENSMUST00000188319 893 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Gm43752-201ENSMUST00000198475 697 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC12.68□□□□□ -0.38
Sox9Q04887 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Ap3s1-202ENSMUST00000224622 978 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Gm4604-201ENSMUST00000025040 390 ntBASIC12.68□□□□□ -0.38
Sox9Q04887 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Sox9Q04887 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sox9Q04887 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox9Q04887 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sox9Q04887 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 n-R5s64-201ENSMUST00000102019 119 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC12.67□□□□□ -0.38
Sox9Q04887 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Gm12218-201ENSMUST00000117666 399 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Gm12943-201ENSMUST00000119616 210 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.67□□□□□ -0.38
Sox9Q04887 Gm25604-201ENSMUST00000158359 133 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.67□□□□□ -0.38
Sox9Q04887 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sox9Q04887 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Sox9Q04887 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Sox9Q04887 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox9Q04887 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Sox9Q04887 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Sox9Q04887 Gm10305-201ENSMUST00000195331 2475 ntBASIC12.66□□□□□ -0.38
Sox9Q04887 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sox9Q04887 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.66□□□□□ -0.38
Sox9Q04887 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox9Q04887 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms