Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.57□□□□□ -0.24
Col6a1Q04857 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm11892-201ENSMUST00000117711 1202 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm12314-201ENSMUST00000118104 538 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm14314-201ENSMUST00000118225 1015 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm12196-201ENSMUST00000120954 262 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm11434-201ENSMUST00000122379 629 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm22138-201ENSMUST00000158748 128 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm25072-201ENSMUST00000175233 235 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm3671-201ENSMUST00000182463 1007 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm5733-201ENSMUST00000190232 939 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm19166-201ENSMUST00000196041 1063 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Mir7686-201ENSMUST00000200604 57 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.56□□□□□ -0.24
Col6a1Q04857 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col6a1Q04857 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Col6a1Q04857 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Gm22133-201ENSMUST00000102082 109 ntBASIC13.55□□□□□ -0.24
Col6a1Q04857 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Mir7221-201ENSMUST00000184009 72 ntBASIC13.55□□□□□ -0.24
Col6a1Q04857 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Gm9132-201ENSMUST00000210182 832 ntBASIC13.55□□□□□ -0.24
Col6a1Q04857 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC13.55□□□□□ -0.24
Col6a1Q04857 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.55□□□□□ -0.24
Col6a1Q04857 AC154176.1-201ENSMUST00000225897 220 ntBASIC13.55□□□□□ -0.24
Col6a1Q04857 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Col6a1Q04857 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms