Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Gm15544-201ENSMUST00000118776 1531 ntBASIC11.72□□□□□ -0.53
Lire1P11260 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Gm45643-201ENSMUST00000211364 1484 ntBASIC11.72□□□□□ -0.53
Lire1P11260 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Olfr1490-202ENSMUST00000213900 5165 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lire1P11260 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC11.72□□□□□ -0.53
Lire1P11260 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Lire1P11260 Gm13350-201ENSMUST00000120519 479 ntBASIC11.72□□□□□ -0.53
Lire1P11260 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.72□□□□□ -0.53
Lire1P11260 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.72□□□□□ -0.53
Lire1P11260 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC11.72□□□□□ -0.53
Lire1P11260 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Lire1P11260 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Gm26737-201ENSMUST00000181106 2151 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Tmem92-201ENSMUST00000100554 2043 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lire1P11260 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Glt1d1-201ENSMUST00000118139 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.71□□□□□ -0.53
Lire1P11260 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 AC122314.1-201ENSMUST00000223056 2239 ntBASIC11.71□□□□□ -0.53
Lire1P11260 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Lire1P11260 Gm22018-201ENSMUST00000104357 131 ntBASIC11.71□□□□□ -0.53
Lire1P11260 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC11.71□□□□□ -0.53
Lire1P11260 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Gm27243-201ENSMUST00000183964 521 ntBASIC11.71□□□□□ -0.53
Lire1P11260 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC11.71□□□□□ -0.53
Lire1P11260 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.71□□□□□ -0.53
Lire1P11260 Gm4857-201ENSMUST00000192718 785 ntBASIC11.71□□□□□ -0.53
Lire1P11260 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 CT485787.1-201ENSMUST00000225617 968 ntBASIC11.71□□□□□ -0.53
Lire1P11260 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC11.71□□□□□ -0.53
Lire1P11260 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Lire1P11260 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lire1P11260 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Lire1P11260 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lire1P11260 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.7□□□□□ -0.54
Lire1P11260 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC11.7□□□□□ -0.54
Lire1P11260 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Lire1P11260 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Lire1P11260 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms